Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32414

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 707

Length: 1179
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29


Found at i:1072 original size:21 final size:21

Alignment explanation


    Indices: 1048--1089  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1038 AGCCAAAGAA

                                 
       1048 AAAATTGCGATTGAATCGACG
          1 AAAATTGCGATTGAATCGACG

                                 
       1069 AAAATTGCGATTGAATCGACG
          1 AAAATTGCGATTGAATCGACG

       1090 GCAGAGCACA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24


Consensus pattern (21 bp):   
AAAATTGCGATTGAATCGACG
Done.