Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33341

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 635

Length: 1059
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24


Found at i:501 original size:3 final size:3

Alignment explanation


    Indices: 493--517  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        483 CGATTCATCT

                                             
        493 CAA CAA CAA CAA CAA CAA CAA CAA C
          1 CAA CAA CAA CAA CAA CAA CAA CAA C

        518 GAAGGGTTTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.64, C:0.36, G:0.00, T:0.00


Consensus pattern (3 bp):   
CAA

Done.