Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33536

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4950
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25


Found at i:4862 original size:9 final size:9

Alignment explanation


    Indices: 4848--4873  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       4838 GGGGAGGCAA

                     
       4848 GAAGAAAGG
          1 GAAGAAAGG

                     
       4857 GAAGAAAGG
          1 GAAGAAAGG

                    
       4866 GAAGAAAG
          1 GAAGAAAG

       4874 TTAGTCCAGC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00


Consensus pattern (9 bp):   
GAAGAAAGG
Done.