Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28423

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 871

Length: 1452
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.25


Found at i:456 original size:21 final size:21

Alignment explanation


    Indices: 426--468  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        416 CCGATGATAA

                                 
        426 GCCAAAGAGCTCCACCCTTAT
          1 GCCAAAGAGCTCCACCCTTAT

                 *               
        447 GCCAAGGAGCTCCACCCTTAT
          1 GCCAAAGAGCTCCACCCTTAT

             
        468 G
          1 G

        469 AAACCTACTG


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.26, C:0.37, G:0.19, T:0.19


Consensus pattern (21 bp):   
GCCAAAGAGCTCCACCCTTAT
Done.