Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_34018

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 540

Length: 900
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29


Found at i:171 original size:6 final size:6

Alignment explanation


    Indices: 160--199  Score: 80
    Period size: 6  Copynumber: 6.7  Consensus size: 6

        150 TTCCACTTTT

                                                          
        160 CACCAA CACCAA CACCAA CACCAA CACCAA CACCAA CACC
          1 CACCAA CACCAA CACCAA CACCAA CACCAA CACCAA CACC

        200 CTCCTCCATG


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   34  1.00

ACGTcount: A:0.47, C:0.53, G:0.00, T:0.00


Consensus pattern (6 bp):   
CACCAA

Done.