Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_22563

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 428

Length: 714
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.25


Found at i:330 original size:72 final size:72

Alignment explanation


    Indices: 237--377  Score: 205
    Period size: 72  Copynumber: 2.0  Consensus size: 72

        227 AGTCCGAGCG

                                                        *          *         
        237 ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGTAGGCAATGACTATTT-TCCG
          1 ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATTTCT-CG

                    
        301 GGCTCGTC
         65 GGCTCGTC

                       *                               *  *                  
        309 ATCGCATTCACTTTCCG-CTGATACTTCTTATCATCCGGATTTTGCGGGCAATGACAATTTCTCG
          1 ATCGCATTCACATT-CGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATTTCTCG

                 
        373 GGCTC
         65 GGCTC

        378 ATCGGGGGGC


Statistics
Matches: 62,  Mismatches: 5, Indels: 4
        0.87            0.07        0.06

Matches are distributed among these distances:
  72   59  0.95
  73    3  0.05

ACGTcount: A:0.20, C:0.26, G:0.19, T:0.35


Consensus pattern (72 bp):   
ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATTTCTCGG
GCTCGTC
Done.