Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29436

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4812
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26


Found at i:4721 original size:45 final size:45

Alignment explanation


    Indices: 4652--4753  Score: 170
    Period size: 45  Copynumber: 2.3  Consensus size: 45

       4642 GCTTTCCCTG

                                              *           
       4652 GTGGTTGGGGTGCTTCTGGAACTGAAAGTGG-AGGTGGCAGCGGCA
          1 GTGGTTGGGGTGCTTCTGGAACTGAAAGTGGCA-ATGGCAGCGGCA

                *                                        
       4697 GTGGCTGGGGTGCTTCTGGAACTGAAAGTGGCAATGGCAGCGGCA
          1 GTGGTTGGGGTGCTTCTGGAACTGAAAGTGGCAATGGCAGCGGCA

                        
       4742 GTGGTTGGGGTG
          1 GTGGTTGGGGTG

       4754 GCGGTAGTGG


Statistics
Matches: 53,  Mismatches: 3, Indels: 2
        0.91            0.05        0.03

Matches are distributed among these distances:
  45   52  0.98
  46    1  0.02

ACGTcount: A:0.17, C:0.14, G:0.47, T:0.23


Consensus pattern (45 bp):   
GTGGTTGGGGTGCTTCTGGAACTGAAAGTGGCAATGGCAGCGGCA
Done.