Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05498

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 723

Length: 1205
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27


Found at i:1143 original size:3 final size:3

Alignment explanation


    Indices: 1135--1168  Score: 68
    Period size: 3  Copynumber: 11.3  Consensus size: 3

       1125 GCTCAAATGC

                                                         
       1135 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
          1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A

       1169 GATTTCTGGA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   31  1.00

ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00


Consensus pattern (3 bp):   
AAG

Done.