Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30015

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 743

Length: 1239
ACGTcount: A:0.33, C:0.13, G:0.30, T:0.23


Found at i:838 original size:21 final size:21

Alignment explanation


    Indices: 814--854  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        804 CAGTGAGGAT

                    *     *      
        814 GATGATGATAATGATGACGAC
          1 GATGATGACAATGACGACGAC

                                
        835 GATGATGACAATGACGACGA
          1 GATGATGACAATGACGACGA

        855 TTATGCTGTT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.39, C:0.12, G:0.29, T:0.20


Consensus pattern (21 bp):   
GATGATGACAATGACGACGAC

Found at i:840 original size:18 final size:18

Alignment explanation


    Indices: 817--855  Score: 51
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        807 TGAGGATGAT

                    **        
        817 GATGATAATGATGACGAC
          1 GATGATAACAATGACGAC

                  *           
        835 GATGATGACAATGACGAC
          1 GATGATAACAATGACGAC

               
        853 GAT
          1 GAT

        856 TATGCTGTTT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.38, C:0.13, G:0.28, T:0.21


Consensus pattern (18 bp):   
GATGATAACAATGACGAC
Done.