Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08336

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 948

Length: 1581
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25


Found at i:743 original size:18 final size:18

Alignment explanation


    Indices: 720--754  Score: 70
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        710 GTAAAGGATC

                              
        720 AGGATCAGCATCAGCCAA
          1 AGGATCAGCATCAGCCAA

                             
        738 AGGATCAGCATCAGCCA
          1 AGGATCAGCATCAGCCA

        755 CAGCTAAGCG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.37, C:0.29, G:0.23, T:0.11


Consensus pattern (18 bp):   
AGGATCAGCATCAGCCAA
Done.