Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14353

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1908
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26


Found at i:1216 original size:18 final size:18

Alignment explanation


    Indices: 1195--1229  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       1185 TGTGAGAACC

                       *      
       1195 TCACAACCACAGCCACAG
          1 TCACAACCACAACCACAG

                             
       1213 TCACAACCACAACCACA
          1 TCACAACCACAACCACA

       1230 ACCTCATGAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.43, C:0.46, G:0.06, T:0.06


Consensus pattern (18 bp):   
TCACAACCACAACCACAG
Done.