Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20864

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2013
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.31


Found at i:1662 original size:15 final size:15

Alignment explanation


    Indices: 1642--1670  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

       1632 TTCGGAGTTC

                           
       1642 GATGACGATGAAGAA
          1 GATGACGATGAAGAA

                          
       1657 GATGACGATGAAGA
          1 GATGACGATGAAGA

       1671 GGAAGAAGAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.45, C:0.07, G:0.34, T:0.14


Consensus pattern (15 bp):   
GATGACGATGAAGAA

Found at i:1665 original size:21 final size:21

Alignment explanation


    Indices: 1641--1680  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       1631 CTTCGGAGTT

                  *  *           
       1641 CGATGACGATGAAGAAGATGA
          1 CGATGAAGAGGAAGAAGATGA

                               
       1662 CGATGAAGAGGAAGAAGAT
          1 CGATGAAGAGGAAGAAGAT

       1681 AGGAGCTTGG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.45, C:0.07, G:0.35, T:0.12


Consensus pattern (21 bp):   
CGATGAAGAGGAAGAAGATGA
Done.