Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17026

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 874

Length: 1457
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21


Found at i:1098 original size:6 final size:6

Alignment explanation


    Indices: 1089--1117  Score: 58
    Period size: 6  Copynumber: 4.8  Consensus size: 6

       1079 AGACCGTGAG

                                             
       1089 AGGGAC AGGGAC AGGGAC AGGGAC AGGGA
          1 AGGGAC AGGGAC AGGGAC AGGGAC AGGGA

       1118 TTATGATGCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.34, C:0.14, G:0.52, T:0.00


Consensus pattern (6 bp):   
AGGGAC

Done.