Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06244

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 504

Length: 840
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29


Found at i:44 original size:23 final size:24

Alignment explanation


    Indices: 13--58  Score: 76
    Period size: 23  Copynumber: 2.0  Consensus size: 24

          3 GCTTCCATCT

                      *             
         13 CTTCATCTCCTTTCCTCCCCTTCC
          1 CTTCATCTCCCTTCCTCCCCTTCC

                                   
         37 CTTC-TCTCCCTTCCTCCCCTTC
          1 CTTCATCTCCCTTCCTCCCCTTC

         59 ACAACCCATC


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  23   17  0.81
  24    4  0.19

ACGTcount: A:0.02, C:0.57, G:0.00, T:0.41


Consensus pattern (24 bp):   
CTTCATCTCCCTTCCTCCCCTTCC
Done.