Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06027

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2214
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27


Found at i:207 original size:39 final size:39

Alignment explanation


    Indices: 159--237  Score: 158
    Period size: 39  Copynumber: 2.0  Consensus size: 39

        149 GCACCTCTGT

                                                   
        159 CTTGCAAGCTGCTGACAACTTATCTATTGAAGGGCACCA
          1 CTTGCAAGCTGCTGACAACTTATCTATTGAAGGGCACCA

                                                   
        198 CTTGCAAGCTGCTGACAACTTATCTATTGAAGGGCACCA
          1 CTTGCAAGCTGCTGACAACTTATCTATTGAAGGGCACCA

             
        237 C
          1 C

        238 AAGAAGGATC


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  39   40  1.00

ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25


Consensus pattern (39 bp):   
CTTGCAAGCTGCTGACAACTTATCTATTGAAGGGCACCA
Done.