Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05001

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5186
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26


Found at i:2490 original size:15 final size:15

Alignment explanation


    Indices: 2472--2512  Score: 64
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       2462 TGATGAAGTT

                           
       2472 GAAAGAGATGAGGTG
          1 GAAAGAGATGAGGTG

                       *  *
       2487 GAAAGAGATGATGTT
          1 GAAAGAGATGAGGTG

                       
       2502 GAAAGAGATGA
          1 GAAAGAGATGA

       2513 AGACTCTGAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  15   24  1.00

ACGTcount: A:0.44, C:0.00, G:0.39, T:0.17


Consensus pattern (15 bp):   
GAAAGAGATGAGGTG
Done.