Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14509

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2057
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26


Found at i:765 original size:39 final size:39

Alignment explanation


    Indices: 712--789  Score: 138
    Period size: 39  Copynumber: 2.0  Consensus size: 39

        702 GGTGGTCAAC

                                   *               
        712 ATAATAAAGGGCAACAAAATCCACCAGATTCAGAACCCA
          1 ATAATAAAGGGCAACAAAATCCAACAGATTCAGAACCCA

                 *                                 
        751 ATAATCAAGGGCAACAAAATCCAACAGATTCAGAACCCA
          1 ATAATAAAGGGCAACAAAATCCAACAGATTCAGAACCCA

        790 TTCCTCCACA


Statistics
Matches: 37,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  39   37  1.00

ACGTcount: A:0.49, C:0.26, G:0.13, T:0.13


Consensus pattern (39 bp):   
ATAATAAAGGGCAACAAAATCCAACAGATTCAGAACCCA
Done.