Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00788

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 552

Length: 921
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24


Found at i:738 original size:23 final size:25

Alignment explanation


    Indices: 701--747  Score: 64
    Period size: 23  Copynumber: 2.0  Consensus size: 25

        691 GAGCTGGCTG

                                     
        701 CTGGTCTGGTCTGCA-A-AAGGATA
          1 CTGGTCTGGTCTGCAGAGAAGGATA

                                     
        724 CTGGTCTGTGT-TGCAGAGAAGGAT
          1 CTGGTCTG-GTCTGCAGAGAAGGAT

        748 TTTCTGAGAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 4
        0.84            0.00        0.16

Matches are distributed among these distances:
  23   12  0.57
  24    3  0.14
  25    6  0.29

ACGTcount: A:0.23, C:0.15, G:0.34, T:0.28


Consensus pattern (25 bp):   
CTGGTCTGGTCTGCAGAGAAGGATA
Done.