Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04449

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 269
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26


Found at i:179 original size:22 final size:20

Alignment explanation


    Indices: 135--179  Score: 63
    Period size: 20  Copynumber: 2.1  Consensus size: 20

        125 CTTCAGACGT

                          *     
        135 GGATATCGCGATACTCAAAG
          1 GGATATCGCGATACACAAAG

                                  
        155 GGATATCGCGATACCACTAAAG
          1 GGATATCGCGATA-CAC-AAAG

               
        177 GGA
          1 GGA

        180 ATCTTGATCT


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  20   13  0.59
  21    2  0.09
  22    7  0.32

ACGTcount: A:0.36, C:0.20, G:0.27, T:0.18


Consensus pattern (20 bp):   
GGATATCGCGATACACAAAG
Done.