Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07243

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4035
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22


Found at i:476 original size:6 final size:6

Alignment explanation


    Indices: 465--491  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

        455 GCGGCCAAGT

                                           
        465 GGAAGC GGAAGC GGAAGC GGAAGC GGA
          1 GGAAGC GGAAGC GGAAGC GGAAGC GGA

        492 CGGAGAAGGG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.33, C:0.15, G:0.52, T:0.00


Consensus pattern (6 bp):   
GGAAGC

Done.