Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_39507

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 514

Length: 858
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30


Found at i:855 original size:21 final size:22

Alignment explanation


    Indices: 816--856  Score: 57
    Period size: 21  Copynumber: 1.9  Consensus size: 22

        806 TCGGCCTCGC

                         *        
        816 ATGGTCTCGTTTCGAGTCATGG
          1 ATGGTCTCGTTTCCAGTCATGG

                          *     
        838 ATGG-CTCGTTTCCTGTCAT
          1 ATGGTCTCGTTTCCAGTCAT

        857 AA


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21   13  0.76
  22    4  0.24

ACGTcount: A:0.12, C:0.22, G:0.27, T:0.39


Consensus pattern (22 bp):   
ATGGTCTCGTTTCCAGTCATGG
Done.