Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26259

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2010
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.21


Found at i:1190 original size:15 final size:15

Alignment explanation


    Indices: 1170--1200  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1160 CAACTGTTAG

                           
       1170 TACTATCCCCTCGGT
          1 TACTATCCCCTCGGT

                           
       1185 TACTATCCCCTCGGT
          1 TACTATCCCCTCGGT

             
       1200 T
          1 T

       1201 CCACCTCCGC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.13, C:0.39, G:0.13, T:0.35


Consensus pattern (15 bp):   
TACTATCCCCTCGGT
Done.