Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16507

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1701
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20


Found at i:1309 original size:9 final size:9

Alignment explanation


    Indices: 1295--1328  Score: 68
    Period size: 9  Copynumber: 3.8  Consensus size: 9

       1285 TCCCGAGAGG

                     
       1295 AAGAAGAAC
          1 AAGAAGAAC

                     
       1304 AAGAAGAAC
          1 AAGAAGAAC

                     
       1313 AAGAAGAAC
          1 AAGAAGAAC

                   
       1322 AAGAAGA
          1 AAGAAGA

       1329 TGAAAGGAGA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   25  1.00

ACGTcount: A:0.68, C:0.09, G:0.24, T:0.00


Consensus pattern (9 bp):   
AAGAAGAAC
Done.