Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15984

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 377

Length: 629
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.22


Found at i:175 original size:12 final size:12

Alignment explanation


    Indices: 160--212  Score: 54
    Period size: 12  Copynumber: 4.4  Consensus size: 12

        150 TTTAGGCTCA

                 *      
        160 GGTTCTGGATAT
          1 GGTTCAGGATAT

                    *   
        172 GGTTCAGGGTAT
          1 GGTTCAGGATAT

                 *       
        184 GGTTCCGGA-AGT
          1 GGTTCAGGATA-T

              *         
        196 GGCTCAGGATAT
          1 GGTTCAGGATAT

                 
        208 GGTTC
          1 GGTTC

        213 GGGAGCTTAT


Statistics
Matches: 32,  Mismatches: 7, Indels: 4
        0.74            0.16        0.09

Matches are distributed among these distances:
  11    1  0.03
  12   30  0.94
  13    1  0.03

ACGTcount: A:0.17, C:0.13, G:0.38, T:0.32


Consensus pattern (12 bp):   
GGTTCAGGATAT
Done.