Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11978

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 286

Length: 477
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.22


Found at i:304 original size:111 final size:111

Alignment explanation


    Indices: 124--342  Score: 438
    Period size: 111  Copynumber: 2.0  Consensus size: 111

        114 TTCTGTCTTT

                                                                             
        124 GCCAAGGGGAAGCAACAAAAGACGAAAAGCCTTGGAAATGAGCAAGATTTCGTCGCTGCTTCATT
          1 GCCAAGGGGAAGCAACAAAAGACGAAAAGCCTTGGAAATGAGCAAGATTTCGTCGCTGCTTCATT

                                                          
        189 ACCTCCTCGTCATCCTCGACGACGAGACCATGAAGATTTTGTCACC
         66 ACCTCCTCGTCATCCTCGACGACGAGACCATGAAGATTTTGTCACC

                                                                             
        235 GCCAAGGGGAAGCAACAAAAGACGAAAAGCCTTGGAAATGAGCAAGATTTCGTCGCTGCTTCATT
          1 GCCAAGGGGAAGCAACAAAAGACGAAAAGCCTTGGAAATGAGCAAGATTTCGTCGCTGCTTCATT

                                                       
        300 ACCTCCTCGTCATCCTCGACGACGAGACCATGAAGATTTTGTC
         66 ACCTCCTCGTCATCCTCGACGACGAGACCATGAAGATTTTGTC

        343 GCGTTTAATT


Statistics
Matches: 108,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 111  108  1.00

ACGTcount: A:0.31, C:0.26, G:0.23, T:0.21


Consensus pattern (111 bp):   
GCCAAGGGGAAGCAACAAAAGACGAAAAGCCTTGGAAATGAGCAAGATTTCGTCGCTGCTTCATT
ACCTCCTCGTCATCCTCGACGACGAGACCATGAAGATTTTGTCACC
Done.