Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15521

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 423

Length: 705
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26


Found at i:466 original size:33 final size:32

Alignment explanation


    Indices: 429--540  Score: 93
    Period size: 33  Copynumber: 3.4  Consensus size: 32

        419 ATTTATCTCA

                                             *
        429 GTACTCTACTCCTTCCGGCTCGTATCCACC-CAT
          1 GTACTCTACTCCTTCCGGC-CGTATCCACCGC-C

                  *              *            
        462 GTACTCAACTCC-TCCAGAGCAGTATCCACCGCC
          1 GTACTCTACTCCTTCC-G-GCCGTATCCACCGCC

                         *       *        *  
        495 GTACTCTACTCCTCCCGGCCCATATCCACCTCC
          1 GTACTCTACTCCTTCCGG-CCGTATCCACCGCC

            *  *         
        528 ATATTCTACTCCT
          1 GTACTCTACTCCT

        541 CTCGGCTCAA


Statistics
Matches: 64,  Mismatches: 10, Indels: 10
        0.76            0.12        0.12

Matches are distributed among these distances:
  32    4  0.06
  33   55  0.86
  34    5  0.08

ACGTcount: A:0.19, C:0.44, G:0.11, T:0.27


Consensus pattern (32 bp):   
GTACTCTACTCCTTCCGGCCGTATCCACCGCC

Done.