Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_36994

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 266

Length: 444
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29


Found at i:389 original size:33 final size:33

Alignment explanation


    Indices: 352--414  Score: 83
    Period size: 33  Copynumber: 1.9  Consensus size: 33

        342 TCCTAGTCTA

                             *                
        352 TATCCACCG-TCCTACTTCACTCCTCCCGACCCG
          1 TATCCACCGCT-CTACTCCACTCCTCCCGACCCG

                  *    *                  
        385 TATCCATCGCTGTACTCCACTCCTCCCGAC
          1 TATCCACCGCTCTACTCCACTCCTCCCGAC

        415 TCATGTTTAT


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
  33   25  0.96
  34    1  0.04

ACGTcount: A:0.16, C:0.49, G:0.10, T:0.25


Consensus pattern (33 bp):   
TATCCACCGCTCTACTCCACTCCTCCCGACCCG
Done.