Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12219

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 811

Length: 1353
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.32


Found at i:576 original size:18 final size:18

Alignment explanation


    Indices: 544--578  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        534 CTACGAGGTT

                     *        
        544 ATCGAGGAAGGAACCGAA
          1 ATCGAGGAACGAACCGAA

                      *      
        562 ATCGAGGAACTAACCGA
          1 ATCGAGGAACGAACCGA

        579 TTTGCCTACG


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.43, C:0.20, G:0.29, T:0.09


Consensus pattern (18 bp):   
ATCGAGGAACGAACCGAA
Done.