Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16685

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2187
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28


Found at i:898 original size:72 final size:72

Alignment explanation


    Indices: 781--926  Score: 238
    Period size: 72  Copynumber: 2.0  Consensus size: 72

        771 TCAGTTTTCG

                            *                                        * *     
        781 GGGAAAATCCCTCATGGAATTGGGGAACTGAAAAGATTGAGCAGCCTTGAATTGCAATATAACAG
          1 GGGAAAATCCCTCATGAAATTGGGGAACTGAAAAGATTGAGCAGCCTTGAATTGCAAGAAAACAG

                   
        846 GTTATCT
         66 GTTATCT

                         *                   *                             * 
        853 GGGAAAATCCCTCGTGAAATTGGGGAACTGAAAGGATTGAGCAGCCTTGAATTGCAAGAAAACGG
          1 GGGAAAATCCCTCATGAAATTGGGGAACTGAAAAGATTGAGCAGCCTTGAATTGCAAGAAAACAG

                   
        918 GTTATCT
         66 GTTATCT

              
        925 GG
          1 GG

        927 TTCTATACCT


Statistics
Matches: 68,  Mismatches: 6, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  72   68  1.00

ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23


Consensus pattern (72 bp):   
GGGAAAATCCCTCATGAAATTGGGGAACTGAAAAGATTGAGCAGCCTTGAATTGCAAGAAAACAG
GTTATCT
Done.