Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20292

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 216

Length: 360
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29


Found at i:39 original size:3 final size:3

Alignment explanation


    Indices: 31--62  Score: 64
    Period size: 3  Copynumber: 10.7  Consensus size: 3

         21 TTTGAACCTT

                                                      
         31 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
          1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA

         63 AGACGCTTTT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00


Consensus pattern (3 bp):   
GAG

Done.