Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02781

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3849
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24


Found at i:1493 original size:6 final size:6

Alignment explanation


    Indices: 1482--1512  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

       1472 CTGATTGCAT

                                                
       1482 AGATGA AGATGA AGATGA AGATGA AGATGA A
          1 AGATGA AGATGA AGATGA AGATGA AGATGA A

       1513 ACCTCAAAGG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.52, C:0.00, G:0.32, T:0.16


Consensus pattern (6 bp):   
AGATGA

Done.