Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_01582

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 513

Length: 855
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25


Found at i:132 original size:3 final size:3

Alignment explanation


    Indices: 124--155  Score: 55
    Period size: 3  Copynumber: 10.7  Consensus size: 3

        114 TGAACTATGG

                                *                     
        124 CAA CAA CAA CAA CAA GAA CAA CAA CAA CAA CA
          1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CA

        156 TATTTACATG


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.66, C:0.31, G:0.03, T:0.00


Consensus pattern (3 bp):   
CAA

Done.