Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14037

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 817

Length: 1362
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.25


Found at i:1193 original size:9 final size:9

Alignment explanation


    Indices: 1179--1210  Score: 55
    Period size: 9  Copynumber: 3.4  Consensus size: 9

       1169 GTAATTATGT

                     
       1179 GATGGAGGA
          1 GATGGAGGA

                     
       1188 GATGGAGGA
          1 GATGGAGGA

                      
       1197 GATGGAGGAA
          1 GATGGAGG-A

                
       1207 GATG
          1 GATG

       1211 AAGATGATGC


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   9   17  0.77
  10    5  0.23

ACGTcount: A:0.34, C:0.00, G:0.53, T:0.12


Consensus pattern (9 bp):   
GATGGAGGA
Done.