Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05263

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 549

Length: 915
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28


Found at i:583 original size:54 final size:54

Alignment explanation


    Indices: 518--627  Score: 139
    Period size: 54  Copynumber: 2.0  Consensus size: 54

        508 AATATGGAGG

                                * *                     *         
        518 TGAACACTGAATTGCTACCATATCCTACAGAAGATTATACAAGTGCTAAAGAGA
          1 TGAACACTGAATTGCTACCAAAGCCTACAGAAGATTATACAAGTCCTAAAGAGA

                  *       *            *        *    *      *     
        572 TGAACATTGAATTGTTACCAAAGCCTAGAGAAGATTCTACAGGTCCTAGAGAGA
          1 TGAACACTGAATTGCTACCAAAGCCTACAGAAGATTATACAAGTCCTAAAGAGA

              
        626 TG
          1 TG

        628 GAGGAGTGGA


Statistics
Matches: 47,  Mismatches: 9, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  54   47  1.00

ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25


Consensus pattern (54 bp):   
TGAACACTGAATTGCTACCAAAGCCTACAGAAGATTATACAAGTCCTAAAGAGA
Done.