Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04824

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 397

Length: 663
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26


Found at i:485 original size:24 final size:24

Alignment explanation


    Indices: 457--541  Score: 118
    Period size: 24  Copynumber: 3.5  Consensus size: 24

        447 CCCTCCTCGT

                                 *  
        457 CCATTCCCTCCTCACCCACCGGGA
          1 CCATTCCCTCCTCACCCACCGCGA

                             *      
        481 CCATTCCCTCCTCACCCGCCGCGA
          1 CCATTCCCTCCTCACCCACCGCGA

                           *     *   
        505 CCGA-TCCCTCCTCATCCACCACGA
          1 CC-ATTCCCTCCTCACCCACCGCGA

                         
        529 CCATTCCCTCCTC
          1 CCATTCCCTCCTC

        542 CTCATCCTCA


Statistics
Matches: 54,  Mismatches: 5, Indels: 4
        0.86            0.08        0.06

Matches are distributed among these distances:
  23    1  0.02
  24   52  0.96
  25    1  0.02

ACGTcount: A:0.15, C:0.56, G:0.09, T:0.19


Consensus pattern (24 bp):   
CCATTCCCTCCTCACCCACCGCGA
Done.