Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_34959

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 205

Length: 342
ACGTcount: A:0.18, C:0.32, G:0.26, T:0.24


Found at i:216 original size:12 final size:12

Alignment explanation


    Indices: 168--209  Score: 57
    Period size: 12  Copynumber: 3.5  Consensus size: 12

        158 GTCCAAATGA

                    *   
        168 AAGCGAGGGCCC
          1 AAGCGAGGACCC

               *     *  
        180 AAGTGAGGAACC
          1 AAGCGAGGACCC

                        
        192 AAGCGAGGACCC
          1 AAGCGAGGACCC

                  
        204 AAGCGA
          1 AAGCGA

        210 AGGCCCAGCG


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  12   25  1.00

ACGTcount: A:0.36, C:0.26, G:0.36, T:0.02


Consensus pattern (12 bp):   
AAGCGAGGACCC
Done.