Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07900

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 705

Length: 1176
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25


Found at i:217 original size:9 final size:9

Alignment explanation


    Indices: 205--238  Score: 50
    Period size: 9  Copynumber: 3.8  Consensus size: 9

        195 GCAGCGTCAC

                    *
        205 CAGCAGCAG
          1 CAGCAGCAA

                     
        214 CAGCAGCAA
          1 CAGCAGCAA

              *      
        223 CAACAGCAA
          1 CAGCAGCAA

                   
        232 CAGCAGC
          1 CAGCAGC

        239 CCAAACCGTT


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   9   22  1.00

ACGTcount: A:0.41, C:0.35, G:0.24, T:0.00


Consensus pattern (9 bp):   
CAGCAGCAA
Done.