Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19190

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 871

Length: 1452
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.23


Found at i:1014 original size:12 final size:12

Alignment explanation


    Indices: 997--1022  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        987 GCGTGTGAGG

                        
        997 CATGAACTCAAA
          1 CATGAACTCAAA

                        
       1009 CATGAACTCAAA
          1 CATGAACTCAAA

              
       1021 CA
          1 CA

       1023 GGGTTACAAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.50, C:0.27, G:0.08, T:0.15


Consensus pattern (12 bp):   
CATGAACTCAAA
Done.