Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12273

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2049
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.26


Found at i:796 original size:21 final size:20

Alignment explanation


    Indices: 754--796  Score: 50
    Period size: 21  Copynumber: 2.1  Consensus size: 20

        744 TCATTTGCAG

                          *  *  
        754 CATCAATCATGCGTTAATGC
          1 CATCAATCATGCGTCAAAGC

                   *             
        774 CATCAATTATTGCGTCAAAGC
          1 CATCAATCA-TGCGTCAAAGC

              
        795 CA
          1 CA

        797 GCAAACAATT


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  20    8  0.42
  21   11  0.58

ACGTcount: A:0.33, C:0.26, G:0.14, T:0.28


Consensus pattern (20 bp):   
CATCAATCATGCGTCAAAGC
Done.