Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_22626

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 898

Length: 1497
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29


Found at i:424 original size:27 final size:27

Alignment explanation


    Indices: 394--445  Score: 86
    Period size: 27  Copynumber: 1.9  Consensus size: 27

        384 TGAGGTTTCA

                *                      
        394 AAGAGTTCAAAACCATGGCAATTTTTG
          1 AAGACTTCAAAACCATGGCAATTTTTG

                       *             
        421 AAGACTTCAAAGCCATGGCAATTTT
          1 AAGACTTCAAAACCATGGCAATTTT

        446 GGATGGTTAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  27   23  1.00

ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29


Consensus pattern (27 bp):   
AAGACTTCAAAACCATGGCAATTTTTG
Done.