Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15523

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 543

Length: 906
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26


Found at i:870 original size:3 final size:3

Alignment explanation


    Indices: 864--896  Score: 57
    Period size: 3  Copynumber: 11.0  Consensus size: 3

        854 ATGAAGTTGT

                        *                              
        864 TGA TGA TGA CGA TGA TGA TGA TGA TGA TGA TGA
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA

        897 AAATGCTTAA


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   28  1.00

ACGTcount: A:0.33, C:0.03, G:0.33, T:0.30


Consensus pattern (3 bp):   
TGA

Done.