Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_27160

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1791
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30


Found at i:31 original size:3 final size:3

Alignment explanation


    Indices: 25--54  Score: 51
    Period size: 3  Copynumber: 10.0  Consensus size: 3

         15 AGCAGCGGGC

                                             *     
         25 GGA GGA GGA GGA GGA GGA GGA GGA GAA GGA
          1 GGA GGA GGA GGA GGA GGA GGA GGA GGA GGA

         55 CAGCAGCCGC


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00


Consensus pattern (3 bp):   
GGA

Done.