Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04270

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1725
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29


Found at i:1333 original size:24 final size:24

Alignment explanation


    Indices: 1297--1345  Score: 71
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1287 CCAGCAAAGA

                    *         *     
       1297 CTTCCAACTGATTCGCCTGAGAGG
          1 CTTCCAACAGATTCGCCTAAGAGG

                          *         
       1321 CTTCCAACAGATTCTCCTAAGAGG
          1 CTTCCAACAGATTCGCCTAAGAGG

             
       1345 C
          1 C

       1346 CGAGGGAACC


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  24   22  1.00

ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24


Consensus pattern (24 bp):   
CTTCCAACAGATTCGCCTAAGAGG
Done.