Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_22441

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2625
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25


Found at i:2490 original size:15 final size:15

Alignment explanation


    Indices: 2467--2504  Score: 58
    Period size: 15  Copynumber: 2.5  Consensus size: 15

       2457 TCATCTCCCC

                *          
       2467 TTGAGTCCACTACAA
          1 TTGACTCCACTACAA

                         * 
       2482 TTGACTCCACTACCA
          1 TTGACTCCACTACAA

                    
       2497 TTGACTCC
          1 TTGACTCC

       2505 TCTGGAAAAC


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.26, C:0.34, G:0.11, T:0.29


Consensus pattern (15 bp):   
TTGACTCCACTACAA
Done.