Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_13137

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 721

Length: 1203
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26


Found at i:835 original size:9 final size:9

Alignment explanation


    Indices: 823--853  Score: 53
    Period size: 9  Copynumber: 3.4  Consensus size: 9

        813 GAAGATTGAA

                 *   
        823 GAAGCTAAG
          1 GAAGCCAAG

                     
        832 GAAGCCAAG
          1 GAAGCCAAG

                     
        841 GAAGCCAAG
          1 GAAGCCAAG

                
        850 GAAG
          1 GAAG

        854 AGAAAAACAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.45, C:0.16, G:0.35, T:0.03


Consensus pattern (9 bp):   
GAAGCCAAG
Done.