Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16403

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2388
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.28


Found at i:240 original size:21 final size:20

Alignment explanation


    Indices: 210--249  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 20

        200 CCGCCACTCT

                                 
        210 TTCTCCCCCTTAC-CCTCCCC
          1 TTCTCCCCCTT-CTCCTCCCC

                                
        230 TTCTCGCCCCTTCTCCTCCC
          1 TTCTC-CCCCTTCTCCTCCC

        250 GAACGCCACG


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  20    6  0.33
  21   12  0.67

ACGTcount: A:0.03, C:0.62, G:0.03, T:0.33


Consensus pattern (20 bp):   
TTCTCCCCCTTCTCCTCCCC
Done.