Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02791

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 394

Length: 657
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29


Found at i:570 original size:20 final size:18

Alignment explanation


    Indices: 529--570  Score: 66
    Period size: 18  Copynumber: 2.3  Consensus size: 18

        519 TCCACCTTTC

                         *    
        529 ATATATCCTCCACCTCAA
          1 ATATATCCTCCACATCAA

                              
        547 ATATATCCTCCACATCAA
          1 ATATATCCTCCACATCAA

            *     
        565 TTATAT
          1 ATATAT

        571 GAAAACCAAG


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  18   22  1.00

ACGTcount: A:0.36, C:0.31, G:0.00, T:0.33


Consensus pattern (18 bp):   
ATATATCCTCCACATCAA
Done.