Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18070

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3192
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27


Found at i:1838 original size:24 final size:24

Alignment explanation


    Indices: 1809--1860  Score: 104
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       1799 CATATACTTG

                                    
       1809 TGATAATGCCTCAGCAGTTTTTGA
          1 TGATAATGCCTCAGCAGTTTTTGA

                                    
       1833 TGATAATGCCTCAGCAGTTTTTGA
          1 TGATAATGCCTCAGCAGTTTTTGA

                
       1857 TGAT
          1 TGAT

       1861 GAAGGTACTT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   28  1.00

ACGTcount: A:0.25, C:0.15, G:0.21, T:0.38


Consensus pattern (24 bp):   
TGATAATGCCTCAGCAGTTTTTGA
Done.