Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29604

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3318
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.31


Found at i:2544 original size:15 final size:17

Alignment explanation


    Indices: 2524--2555  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       2514 CTATGCTTTC

                             
       2524 GTCA-TTGGA-AGCTAT
          1 GTCATTTGGACAGCTAT

                             
       2539 GTCATTTGGACAGCTAT
          1 GTCATTTGGACAGCTAT

       2556 TGCTGGGGCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  15    4  0.27
  16    5  0.33
  17    6  0.40

ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34


Consensus pattern (17 bp):   
GTCATTTGGACAGCTAT
Done.