Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09597

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 216
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.31


Found at i:108 original size:21 final size:21

Alignment explanation


    Indices: 66--108  Score: 50
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         56 ACAAACACAA

                       *    **   
         66 CTCTGCCTCTGTCACCTGCGC
          1 CTCTGCCTCTGCCACCAACGC

                *                
         87 CTCTTCCTCTGCCACCAACGC
          1 CTCTGCCTCTGCCACCAACGC

             
        108 C
          1 C

        109 ACGCCTGTTT


Statistics
Matches: 18,  Mismatches: 4, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.09, C:0.51, G:0.14, T:0.26


Consensus pattern (21 bp):   
CTCTGCCTCTGCCACCAACGC
Done.